- Annual circular of the Medical Department of Kemper College: together with an address delivered before the alumni of the college at the commencement, March 1, 18421
- Brief remarks on the diversities of the human species: and on some kindred subjects : being a introductory lecture delivered before the class of Pennsylvania Medical College, in Philadelphia, November 1, 18421
- Circular letter to the physicians of Kentucky1
- City of Boston: lunatic hospital1
- Claims of the missionary enterprise on the medical profession: an address delivered before the Temperance Society of the College of Physicians and Surgeons of the University of the State of New York, October 28, 18421
- Descriptions of American Limacidæ1
- Diseases of the uterus1
- Doctor Barton's Report: [to the Secretary of the Navy, on the condition of the Medical Department of the Navy]1
- Dr. Paine's answer to circular letters by Drs. Carpenter and Forbes1
- Elements of chemistry: including the most recent discoveries and applications of the science to medicine and pharmacy, and to the arts1
- Enchiridion medicum, or, Manual of the practice of medicine: the result of fifty years' experience1
- Essay on salivary calculus: its nature, causes, effects, removal, and prevention1
- Essay on the most direct methods by which a dental practitioner may succeed, without a possibility of a failure, in degrading both himself and his profession1
- Essays on the philosophy of vitality as contradistinguished from chemical and mechanical philosophy: and on the modus operandi of remedial agents1
- Experiments on kiesteine: with remarks on its application to the diagnosis of pregnancy : an inaugural dissertation for the degree of Doctor of Medicine1
- Facts and important information from distinguished physicians and other sources1
- Facts and important information from distinguished physicians and other sources: designed for females1
- Facts in mesmerism, and thoughts on its causes and uses1
- First principles of medicine1
- Fowler on memory, or, Phrenology applied to the cultivation of memory: the intellectual education of children, and the strengthening and expanding of the intellectual powers1