Scientific Subproject Abstracts 5P41-RR0Q785-14 REFERENCES 1. Shortliffe, E.H., Scott, A.C., Bischoff, M.B., Campbell, A.B. van Melle, W. and Jacobs, C.D.. ONCOCIN: An expert system for oncology protocol management. Proc. Seventh IJCAI, pp. 876-881, Vancouver, B.C., August, 1981. 2. Duda, R.O. and Shortliffe, E.H: Expert systems research. Science 220:261-268, 1983. 3. Langlotz, C.P. and Shortliffe, E.H.: Adapting a consultation system to critique user plans. Int. J. Man-Machine Studies 19:479-496, 1983. 4. Bischoff, M.B., Shortliffe, E.H., Scott, A.C., Carlson, R.W. and Jacobs, C.D.: Integration of a computer-based consultant into the clinical setting. Proceedings 7th Annual Symposium on Computer Applications in Medical Care, pp. 149-152, Baltimore, Maryland, October 1983. 5. Hickam, D.H., Shortliffe, E.H., Bischoff, M.B., Scott, A.C., Jacobs, C.D: A study of the treatment advice of a computer-based cancer chemotherapy protocol advisor (Memo KSL-85-21). Annals of Internal Medicine 103(6 pt 1):928-936 (1985). 6. Kent; D.L., Shortliffe, E.H., Carlson, R.W., Bischoff, M.B., Jacobs, C.D.: Improvements in data collection through physician use of a computer-based chemotherapy treatment consultant (Memo KSL-85-22). Journal of Clinical Oncology 3:1409-1417, 1985. 7. Tsuji, S. and Shortliffe, E.H.: Graphical access to a medical expert system: I. Design of a knowledge engineer's interface (Memo KSL-85-11). Meth. Inf. Med., 25:62-70, 1986. 8. Lane, C.D., Differding, J.C., Shortliffe, E.H.: Graphical access to a medical expert system: II. Design of an interface for physicians (Memo KSL-85-15). Meth. Inf, Med., 25:143-150, 1986. 9. Shortliffe, EH. Medical expert systems: Knowledge tools for physicians. Memo KSL-86-52. Special issue on Medical Informatics, West. J. Med. 145:830-839, 1986. E. H. Shortliffe 226 5P41-RR00785-14 Scientific Subproject Abstracts Stanford Project: PROTEAN Project Principal Investigators: Oleg Jardetzky (JARDETZK Y@SUMEX-AIM.STANFORD.EDU) Nuclear Magnetic Resonance Lab, School of Medicine Stanford University Medical Center Stanford, California 94305 Bruce G. Buchanan, Ph.D. (BUCHANAN@SUMEX-AIM.STANFORD.EDU) Computer Science Department Stanford University Stanford, California 94305 Contact Person: Bruce G. Buchanan The goals of this project are related both to biochemistry and artificial intelligence: (a) use existing AI methods to aid in the determination of the 3-dimensional structure of proteins in solution (not from x-ray crystallography proteins), and (b) use protein structure determination as a test problem for experiments with the AI problem-solving structure known as the Blackboard Model. Empirical data from nuclear magnetic resonance (NMR) and other sources may provide enough constraints on structural descriptions to allow protein chemists to bypass the laborious methods of crystallizing a protein and using X-ray crystallography to determine its structure. This problem exhibits considerable complexity, yet there is reason to believe that AI programs can be written that reason much as experts do to resolve these difficulties. A prototype knowledge-based system assembles major secondary structures of a protein into families of structures compatible with a given set of distance constraints under the control of an explicit assembly strategy. Structures can also be refined at the atomic level of detail using constraints within secondary structures and between amino acid side chains to further restrict the 3-dimensional structure found. By generalizing this approach to the assembly of arrangements of objects subject to constraints, we have developed a language for specifying actions and control for problem solving in similar problem domains. REFERENCES 1. Altman, R. and Jardetzky, O: New strategies for the determination of macromolecular structures in solution. Journal of Biochemistry (Tokyo), Vol. 100, No. 6, p. 1403-1423, 1986. bo . Altman, R. and Buchanan, B.G.: Partial Compilation of Control Knowledge. To appear in: Proceedings of the AAAT 1987. 3. Brinkley, J., Cornelius, C., Altman, R., Hayes-Roth, B. Lichtarge, O., Duncan, B., Buchanan, B.G., Jardetzky, O.: Application of Constraint Satisfaction Techniques to the Determination of Protein Tertiary Structure. Report KSL-86-28, Department of Computer Science, 1986. 4. Brinkley, James F., Buchanan, Bruce G., Altman, Russ B., Duncan, Bruce S., Cornelius, Craig W.: A Heuristic Refinement Method for Spatial Constraint Satisfaction Problems. Report KSL 87-95, Department of Computer Science. 227 BE. H. Shortliffe Scientific Subproject Abstracts 5. 10. 11. 12. 13. 14. Buchanan, B.G., Hayes-Roth, B., Lichtarge, O., Altman, A., Brinkley, J., Hewett, M., Cornelius, C., Duncan, B., Jardetzky, O.:The Heuristic Refinement Method for Deriving Solution Structures of Proteins. Report KSL-85-41. October 1985. . Garvey, Alan, Cornelius, Craig, and Hayes-Roth, Barbara: Computational Costs versus Benefits of Control Reasoning. Report KSL 87-11, Department of Computer Science. . Hayes-Roth, B: The Blackboard Architecture: A General Framework for Problem Solving? Report HPP-83-30, Department of Computer Science, Stanford University, 1983. . Hayes-Roth, B.: BBI: An Environment for Building Blackboard Systems that Control, Explain, and Learn about their own Behavior. Report HPP-84-16, Department of Computer Science, Stanford University, 1984. . Hayes-Roth, B: