Reprinted from the ProcerviInGs oF THE NATIONAL ACADEMY OF SCIENCES Vol. 58, No. 3, pp. 1235-1242. September, 1967. NUCLEASE-T: AN ACTIVE DERIVATIVE OF STAPHYLOCOCCAL NUCLEASE COMPOSED OF TWO NONCOVALENTLY BONDED PEPTIDE FRAGMENTS By Hirosui Tantrucui, CuristiAn B. ANFINSEN, AND ANN SopJa LABORATORY OF CHEMICAL BIOLOGY, NATIONAL INSTITUTE OF ARTHRITIS AND METABOLIC DISEASES, NATIONAL INSTITUTES OF HEALTH, BETHESDA, MARYLAND Communicated July 26, 1967 An extracellular nuclease produced by Staphylococcus aureus!—* has been shown to contain 149 amino acid residues (mol wt, 16,807) and to lack both sulfhydryl groups and disulfide bonds (Fig. 1).2-5 The enzyme catalyzes the cleavage of both DNA and RNA to yield 3’-nucleotides.2 ? The absolute requirement for Cat+1,2,5 may be explained by the interdependency of Cat+ and nucleotide binding to the protein, and the conformation of the enzyme is stabilized by this reversible ligand interaction.7,* The present communication summarizes experi- ments on the cleavage of the polypeptide chain by limited digestion with trypsin in the presence of 3’,5’-deoxythymidine-diphosphate to yield three peptide fragments: Nase-T-p,° (residues 1-5), Nase-T-p. (residues 6-49), and Nase-T-ps (residues 50- 149). The latter two fragments associate reversibly to form an active complex designated nuclease-T (Nase-T) which possesses approximately 8 per cent of the enzyme activity of the native enzyme. “ GOGSOOHSGHOSSOSIOSSOSY SSOSOOOSESSSOOTOSOGOE 4g + 50 OOOO OU OOO OOOO ITS CNTR EESPHIRTC ENE IN HOEIEEIVIOS OSA ENICIEY SOGBOSOSOOSS S COOUEVES G COCCOOOOGOWOOE CIO NTLS 149 AIAG BOA OVEQAQAHOQGOQALE-com Fic. 1.—The proposed amino acid sequence of staphylococeal nuclease Vs.5 The arrows indi- cate the bonds cleaved by trypsin in the presence of 3',5’-dTDP and Ca** (see the text). The amino acid sequences of nucleases produced by strains V; and Foggi are very similar, if not iden- tical, with respect to NH.- and COOH-termini and peptide maps of the tryptic digests (unpub- lished results by H. Taniuchi, C. Cusumano, and C. %. Anfinsen). Accordingly, the designations of the spots on the peptide map are the same as described previously.4 1235 1236 BIOCHEMISTRY: TANIUCHI ET AL. Proc. N. A. 8. Methods.—Staphylococcal nuclease (Foggi strain), obtained from Worthington Biochemical Corp., was further purified on a phosphocellulose column. Other materials and methods have been reported elsewhere,?—® unless otherwise specified. The results of amino acid analyses!) are presented in pzmoles. Preparation of nuclease-T: Four ml of a solution at pH 8.0 containing 50 mg nuclease, 5 mg deoxythymidine-3’,5’-diphosphate (3’5’-dTDP) (Calbiochem), CaClk (0.01 M@), NHsHCOs; (0.05 M), and 0.5 mg trypsin (Worthington, DFP-treated), were incubated at 25° for 2 hr. The reac- tion was stopped by the addition of 1.5 mg soybean trypsin inhibitor (Worthington, crystallized) and the mixture was lyophilized. The dried material was dissolved in 0.5 ml 0.01 N acetic acid— 0.1% ammonium acetate and applied to a Sephadex G-50 (medium, Pharmacia) column (1.2 22 em) equilibrated with the same buffer. The column was developed with the buffer at 5-6 ml per hour at 4°. The absorbancies of the fractions were read at 280 mz. Two peaks (effluent volumes 10-19 mi and 21-39 ml, respectively) were detected. Fractions comprising the peaks were pooled and lyophilized. The second fraction contained Nase-T-p,, free lysine, and 3’,5’-dTDP as determined by absorbancy measurements at 280 and 260 myz and by peptide mapping (see below). Nase-T-p,: and lysine were purified by paper electrophoresis.‘ The material in the first peak from the Sephadex column was dissolved in 4 ml 0.3 M ammonium acetate, pH 6.0, and applied to a phosphocellulose column (1.2 x 10 cm), equilibrated with the same solution. A gradient elution was performed at 70-80 ml per hour using a Varigrad containing, in the first and second chambers, respectively, 100 ml of 0.3 M@ ammonium acetate, pH 6.0, and 100 ml 1.0 M ammonium acetate, pH 8.0. The gradient was followed by additional elution with 50 ml of the second solution. The absorbancies of the fractions, collected every 5 min, were read at 280 my, and each fraction was assayed’ for enzymic activity. Only one major peak appeared, at the same position as previously observed with native nuclease. Essentially constant specific activities (8-9% of the native value) with both DNA and RNA were observed throughout the fractions constituting this peak. The over-all recovery of Nase-T, based on absorbancy at 280 my, was 45-50%. The active fractions were pooled and lyophilized, dissolved in H,O, and lyophilized a second time. Separation of Nase-T-p, and Nase-T-p3;: Nase-T (25 mg), in 1.0 ml 50% CHsCOOH contain- ing phenol red, was applied to a Bio-Gel P-20 (50-150 mesh, Bio-Rad Laboratories) column (2 X 200 cm), equilibrated with 50% CHsCOOH for 48 hr at 4°. The filtration was performed at 5.6 ml per hour at 4° with 50% CH;COOH. The absorbancies of fractions, collected every 30 min, were read at 280 my. Aliquots of fractions, dissolved in H,O after lyophilization, were assayed Tye 15 Lok g 4 2.0 > i > L2 6 B av ‘ 8] > 3 tl @ & 2: 4 2 N Za \ 5 ba | x ~ ZFA5E 410% 3 9?) on